larry._analysis._count_clonal_lineages¶
Module Contents¶
Functions¶
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Count clonal lineages over groups (e.g., time points). |
- larry._analysis._count_clonal_lineages.count_clonal_lineages(adata: anndata.AnnData, lineage_key: str = 'clone_idx', groupby_key: str = 'Time point', return_df: bool = False) pandas.DataFrame¶
Count clonal lineages over groups (e.g., time points).
- adata
type: anndata.AnnData
- lineage_key
type: str default: “clone_idx”
- groupby_key
type: str default: “Time point”
count_df