larry._analysis._count_clones_by_timepoint

Module Contents

Functions

count_clones_by_timepoint(→ pandas.DataFrame)

Annotates adata with pandas.DataFrame: adata.uns['clone_x_timepoint'].

Attributes

__module_name__
__author__
__email__

larry._analysis._count_clones_by_timepoint.__module_name__ = _count_clones_by_timepoint.py

larry._analysis._count_clones_by_timepoint.__author__

larry._analysis._count_clones_by_timepoint.__email__

larry._analysis._count_clones_by_timepoint.count_clones_by_timepoint(adata: anndata.AnnData, lineage_key: str = 'clone_idx', time_key: str = 'Time point', key_added: str = 'lineage_time_counts', return_df: bool = False) → pandas.DataFrame

Annotates adata with pandas.DataFrame: adata.uns[‘clone_x_timepoint’].

adata

type: anndata.AnnData

lineage_key

type: str default: “clone_idx”

time_key

type: str default: “Time point”

return_df

type: bool default: False

None or clone_x_timepoint

type: NoneType or pandas.DataFrame