larry._analysis._count_d2_daughter_cells

Module Contents

Classes

DaughterCellPlots

Functions

_is_d2(obs_df, time_key)
_is_d2_clone(adata[, time_key])
_count_daughter_cells(adata)
_is_np_array(x)
_count_d2_daughter_cells(adata)	For each d2 clone, count num. daughter cells.
count_d2_daughter_cells(adata[, bins, plot_hist, ...])	plot histogram and umap of n_daughters

class larry._analysis._count_d2_daughter_cells.DaughterCellPlots

mk_plot()

plot_hist(n_daughters, bins=50)

plot_umap(adata, d2_mask, count, axn=2, day=4)

larry._analysis._count_d2_daughter_cells._is_d2(obs_df, time_key)

larry._analysis._count_d2_daughter_cells._is_d2_clone(adata, time_key='Time point')

larry._analysis._count_d2_daughter_cells._count_daughter_cells(adata)

larry._analysis._count_d2_daughter_cells._is_np_array(x)

larry._analysis._count_d2_daughter_cells._count_d2_daughter_cells(adata)

For each d2 clone, count num. daughter cells.

larry._analysis._count_d2_daughter_cells.count_d2_daughter_cells(adata, bins=50, plot_hist=True, plot_UMAPs=True)

plot histogram and umap of n_daughters